Technical Note: A generic law-of-the-minimum flux limiter for simulating substrate limitation in biogeochemical models

نویسنده

  • J. Y. Tang
چکیده

We present a generic flux limiter to account for mass limitations from an arbitrary number of substrates in a biogeochemical reaction network. The flux limiter is based on the observation that substrate (e.g., nitrogen, phosphorus) limitation in biogeochemical models can be represented as to ensure mass conservative and non-negative numerical solutions to the governing ordinary differential equations. Application of the flux limiter includes two steps: (1) formulation of the biogeochemical processes with a matrix of stoichiometric coefficients and (2) application of Liebig’s law of the minimum using the dynamic stoichiometric relationship of the reactants. This approach contrasts with the ad hoc down-regulation approaches that are implemented in many existing models (such as CLM4.5 and the ACME (Accelerated Climate Modeling for Energy) Land Model (ALM)) of carbon and nutrient interactions, which are error prone when adding new processes, even for experienced modelers. Through an example implementation with a CENTURYlike decomposition model that includes carbon, nitrogen, and phosphorus, we show that our approach (1) produced almost identical results to that from the ad hoc down-regulation approaches under non-limiting nutrient conditions, (2) properly resolved the negative solutions under substrate-limited conditions where the simple clipping approach failed, (3) successfully avoided the potential conceptual ambiguities that are implied by those ad hoc down-regulation approaches. We expect our approach will make future biogeochemical models easier to improve and more robust.

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Interactive comment on “ Technical Note : A generic law - of - the - minimum flux limiter for simulating substrate limitation in biogeochemical models

The goal of the note is to document a method of solving nutrient dynamics in biogeochemical models. Specially it focuses on improving numerical solutions of biogeochemical models (specifically soil model) so that 1) negative nutrient concentrations are not simulated and 2) serial access (i.e. microbes have first access, then plants) to nutrients is not required by the different nutrient consume...

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Interactive comment on “ Technical Note : A generic law - of - the - minimum flux limiter for simulating substrate limitation in biogeochemical

The goal of the note is to document a method of solving nutrient dynamics in biogeochemical models. Specially it focuses on improving numerical solutions of biogeochemical models (specifically soil model) so that 1) negative nutrient concentrations are not simulated and 2) serial access (i.e. microbes have first access, then plants) to nutrients is not required by the different nutrient consume...

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Interactive comment on “ Technical Note : A generic law - of - the - minimum flux limiter for simulating substrate limitation in biogeochemical models ” by J . Y . Tang and W . J . Riley

General comments The authors describe a new, explicit, first-order accurate numerical integration scheme that is designed to ensure that (elemental) masses are conserved and remain non-negative regardless of the magnitude of the projection timestep. They present a brief summary of prior schemes that have aimed to achieve nonnegativity (but, in some cases, sacrificed conservation). They highligh...

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Technical Note: A generic law-of-the-minimum flux limiter

Introduction Conclusions References Tables Figures

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تاریخ انتشار 2016